PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2008

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 310aa MW: 33788 Da PI: 7.3735

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2008	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.2	5.1e-20	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + Gh_A11G2008 16 KGPWSPEEDDLLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	57.3	3.5e-18	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Gh_A11G2008 70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.329	11	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-32	13	109	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-18	15	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-20	16	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-27	17	69	IPR009057	Homeodomain-like
CDD	cd00167	4.62E-17	18	60	No hit	No description
SMART	SM00717	3.8E-15	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.467	68	117	IPR017930	Myb domain
CDD	cd00167	1.50E-12	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-23	70	116	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-15	70	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDVTSTPNRK EMDRIKGPWS PEEDDLLQQL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCLPV 120 GEECNFVANG GYDGNLGGEE RQPLKRSVSA GLYMSPGSPS GSDVSDSSVP VLSSSYVYKP 180 IPRTGGVNVD VNVTPAGVEA ASSSNDPPTS LSLSLPGVES CEVVSTQPIT ESTQNRSEER 240 GGGVMGFSAE FMAVMQEMIR VEVRNYMTQM QQQQQQQNGA VPGGAGMGMC LDGGFRNLMA 300 VNRVGMSKIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-41	15	117	3	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	6e-41	15	117	3	105	C-Myb DNA-Binding Domain
1msf_C	6e-41	15	117	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9954	0.0	boll\| embryo\| ovule\| root

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459121	1e-70	AJ459121.1 Gossypium hirsutum partial myb104a gene, clone pGhMYB104a.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491895.1	0.0	PREDICTED: transcription factor MYB44
Swissprot	Q9FDW1	1e-103	MYB44_ARATH; Transcription factor MYB44
TrEMBL	A0A0D2SHX2	0.0	A0A0D2SHX2_G
STRING	POPTR_0007s10490.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-103	myb domain protein 73